About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6666564_6667266_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
6666564 - 6667266
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGCTCA
5'SS Class:
weak_major
3'SS Sequence:
ATTTTTTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.2
0.22
1.3
55.9
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.7
0.85
0.7
81
36
Minor 5ss
40.6
-1.1
2.9
52.4
44.6
Minor BPS
70
0.62
1.3
75.65
35.9

Associated Gene:

Gene:
AZIN2
Ensembl Gene ID:
ENSAPLG00000006932
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007201
6666428 - 6670842
4415