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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6667433_6667511_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6667433 - 6667511
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGCC
5'SS Class:
major
3'SS Sequence:
AGCCCTGTCCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGCTGCTCACCC
Flanking Amino Acid:
ENLLVGPCPSSEQQAFFVAD
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
68.8
38
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
59.3
0.21
0.9
50
38.7
Minor 5ss
31
-2.2
3.5
43.1
44.2
Minor BPS
45.9
-0.3
2.2
59.01
45.8

Associated Gene:

Gene:
AZIN2
Ensembl Gene ID:
ENSAPLG00000006932
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007201
6666428 - 6670842
4415