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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6669243_6669349_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6669243 - 6669349
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACGGC
5'SS Class:
major
3'SS Sequence:
TTTCCCCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TTTTCCCCATCC
Flanking Amino Acid:
TEDARAQFEEIAAVINSALD
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
55
43
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
78.8
0.65
0.8
70.6
35.2
Minor 5ss
35
-1.7
3.6
50.3
46.3
Minor BPS
53.3
0.08
2.1
75.79
40.3

Associated Gene:

Gene:
AZIN2
Ensembl Gene ID:
ENSAPLG00000006932
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007201
6666428 - 6670842
4415