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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6669513_6669588_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6669513 - 6669588
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCCGTGGG
5'SS Class:
major
3'SS Sequence:
TCTGCTCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
GGCCCCTGAGCC
Flanking Amino Acid:
EIPMEQPGSDGEESGSKKSL
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.8
0.26
1.4
50.9
46
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
74.5
0.55
0.8
65.7
36
Minor 5ss
26.6
-2.7
3.1
29.3
38
Minor BPS
47.9
-0.1
1.7
54.92
42.3

Associated Gene:

Gene:
AZIN2
Ensembl Gene ID:
ENSAPLG00000006932
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007201
6666428 - 6670842
4415