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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_67015_69442_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67015 - 69442
Intron Length:
2428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAACAT
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
FFLIRVIQSEAEEAGLAVSV
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
53.2
0.08
1.3
63.4
42.8
Major PPT
90.7
0.92
0.7
88.7
26.8
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
RLF
Ensembl Gene ID:
ENSAPLG00000011786
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012274
23045 - 74585
51541