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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6713722_6715454_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6713722 - 6715454
Intron Length:
1733

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCAGTACC
5'SS Class:
major
3'SS Sequence:
GTTCTTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTTCTTTCAACA
Flanking Amino Acid:
AHMVCRMCCMDERDRVQKKT
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
69.7
41.3
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
77.7
0.62
0.9
73.6
35.7
Minor 5ss
32
-2.1
2.5
31
34.4
Minor BPS
59.4
0.29
1.5
69.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017630
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023899
6712681 - 6718247
5567