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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6715517_6716427_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6715517 - 6716427
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
CTGCCCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
GGAGCCCTGAGG
Flanking Amino Acid:
TKWVNKHLMKVRKHINDLYE
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.9
31.6
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
71.6
0.49
0.8
65.1
30.5
Minor 5ss
33.8
-1.8
3.7
49.2
47.3
Minor BPS
41.5
-0.8
2
41.68
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017630
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023899
6712681 - 6718247
5567