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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6727583_6727673_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6727583 - 6727673
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGCGGC
5'SS Class:
major
3'SS Sequence:
TCCCCTTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTGCCTCTCATG
Flanking Amino Acid:
LGVTRLLDAEDVDVASPDEK
Intron Amino Acid Position:
397

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
58.1
41
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
73.7
0.53
0.9
68
37.6
Minor 5ss
29.8
-2.3
3.5
40.6
46
Minor BPS
41.7
-0.7
2
44.61
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021254
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040915
6723272 - 6740226
16955