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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6730431_6730803_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6730431 - 6730803
Intron Length:
373

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TGGCCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTGCAT
U12 Branch Point Sequence:
ATGAGCTTGACT
Flanking Amino Acid:
ELLAWVEEMQMRLERAEWGS
Intron Amino Acid Position:
723

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
62.4
0.31
1.4
73.6
41.8
Major PPT
72.8
0.51
1
69
41.8
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
57.2
0.31
1.9
74.12
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021254
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040915
6723272 - 6740226
16955