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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6787248_6790338_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6787248 - 6790338
Intron Length:
3091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTGCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTATAAATAGCT
Flanking Amino Acid:
PPDGFVPDNELFQKEQVDPL
Intron Amino Acid Position:
1058

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.8
33.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
74.7
0.56
0.9
68.2
37.4
Minor 5ss
44.8
-0.6
3.2
66.9
44.3
Minor BPS
45.9
-0.2
2.2
72.86
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018624
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026251
6783145 - 6791014
7870