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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6817408_6817551_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6817408 - 6817551
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTCCC
5'SS Class:
major
3'SS Sequence:
TTCCTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GGTTTCTCATTT
Flanking Amino Acid:
QEFIDGILASKFPTTKLEMT
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.2
39
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.1
0.79
0.7
76.9
31.8
Minor 5ss
37.3
-1.4
2.9
47.8
35.3
Minor BPS
50.6
0.1
1.8
69.45
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026807
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029448
6817293 - 6825086
7794