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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6818025_6820957_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6818025 - 6820957
Intron Length:
2933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGGCAC
5'SS Class:
major
3'SS Sequence:
GGCCCTGCCTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGAGGAG
U12 Branch Point Sequence:
CTGTGCTTCCCT
Flanking Amino Acid:
VEQIGENKYRLWFLAPQFGD
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
63.9
42.4
Major BPS
31.4
-1.1
1.5
16.9
34.5
Major PPT
46
-0.2
1.6
49.5
39.3
Minor 5ss
30.6
-2.2
3.3
33.6
41.9
Minor BPS
37.7
-0.8
3.7
66.78
49.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026807
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029448
6817293 - 6825086
7794