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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6824694_6824829_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6824694 - 6824829
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GCTCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CGGTGCTCACGG
Flanking Amino Acid:
ASTGAKTSRADPKKTASRPT
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
69.1
0.43
0.8
61.8
28.8
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
36
-1.2
2.2
35.43
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026807
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029448
6817293 - 6825086
7794