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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6833477_6833894_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6833477 - 6833894
Intron Length:
418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGGAC
5'SS Class:
major
3'SS Sequence:
CCCCGTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
GTGCTGTTACTC
Flanking Amino Acid:
IYEIAAEHSNRESDLFLLDT
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
63.7
36.7
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
72.2
0.5
0.8
63.4
36.9
Minor 5ss
23
-3.1
3.4
31.1
43.3
Minor BPS
42.9
-0.5
2.2
51.45
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009638
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010034
6833445 - 6836904
3460