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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6835436_6836754_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6835436 - 6836754
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTCAGTGCC
5'SS Class:
major
3'SS Sequence:
CCTCTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
CCGCGCTCAGGG
Flanking Amino Acid:
ATNHAILQSLVHLMKPEAVP
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.3
69
37
Major BPS
74.8
0.62
1
67
39.8
Major PPT
74.2
0.54
0.7
65.3
30.5
Minor 5ss
29.5
-2.3
3
33.8
35.1
Minor BPS
33
-1.4
2
28.19
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009638
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010034
6833445 - 6836904
3460