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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6840595_6840938_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6840595 - 6840938
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGGAGC
5'SS Class:
major
3'SS Sequence:
TTGTCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTCCTCTGCA
Flanking Amino Acid:
EDAAAAIDNMNESELFGRTI
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
60.7
44
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83
0.74
0.8
77.6
31.1
Minor 5ss
31.7
-2.1
3.3
39.9
41
Minor BPS
40.9
-0.7
3.7
67.53
44.7

Associated Gene:

Gene:
PPIE
Ensembl Gene ID:
ENSAPLG00000009716
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010111
6838420 - 6842149
3730