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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6843642_6843723_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6843642 - 6843723
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GTTTCACAAAGT
Flanking Amino Acid:
LESPESLRSKVEEAVAVLQA
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
79.6
0.67
0.8
77.7
31
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
44.4
-0.3
2.4
70.75
45.5

Associated Gene:

Gene:
PABPC4
Ensembl Gene ID:
ENSAPLG00000009729
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036593
6843555 - 6855304
11750
ENSAPLT00000022952
6843555 - 6855304
11750
ENSAPLT00000010160
6843555 - 6855304
11750