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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6844046_6844675_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6844046 - 6844675
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
TGCCCTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTTTGAACC
Flanking Amino Acid:
SPHPAVQPLQAPQPAVHVQG
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
67.8
39.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
78.4
0.64
0.8
72
32.7
Minor 5ss
36.8
-1.5
3.1
47.7
47.7
Minor BPS
68.9
0.57
1.3
76.03
33.7

Associated Gene:

Gene:
PABPC4
Ensembl Gene ID:
ENSAPLG00000009729
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022952
6843555 - 6855304
11750
ENSAPLT00000010160
6843555 - 6855304
11750
ENSAPLT00000036593
6843555 - 6855304
11750