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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6844804_6845355_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6844804 - 6845355

Intron Length:

552

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGGTGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TGTTTCTAATCC

Flanking Amino Acid:

RGLPAAAQRVGVATAAQNLA

Intron Amino Acid Position:

487

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

72.2

39.9

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

89.2

0.88

0.6

84.3

23.5

Minor 5ss

38.6

-1.3

3.4

52.7

46.4

Minor BPS

55.5

0.15

1.9

70.41

41.2

Associated Gene:

Gene:

PABPC4

Ensembl Gene ID:

ENSAPLG00000009729

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022952

6843555 - 6855304

11750

ENSAPLT00000010160

6843555 - 6855304

11750