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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6845737_6845993_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6845737 - 6845993
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GCACTCTGAGCT
Flanking Amino Acid:
GGYFMPAVPQAQSRPTYYAP
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
75.9
0.58
0.8
66
35.9
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
47
-0.1
1.7
59.98
42.9

Associated Gene:

Gene:
PABPC4
Ensembl Gene ID:
ENSAPLG00000009729
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036593
6843555 - 6855304
11750
ENSAPLT00000022952
6843555 - 6855304
11750
ENSAPLT00000010160
6843555 - 6855304
11750