Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6846856_6847433_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6846856 - 6847433

Intron Length:

578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAATAAT

5'SS Class:

strong_major

3'SS Sequence:

CTCTGTTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAT

U12 Branch Point Sequence:

ATTACTATAGGT

Flanking Amino Acid:

LKQERISRYQGVNLYIKNLD

Intron Amino Acid Position:

295

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

0.8

85.5

24.8

Major BPS

87.4

0.93

0.9

87.9

29.5

Major PPT

79.9

0.67

0.8

72.5

37.7

Minor 5ss

31.3

-2.1

2.9

41.5

45.1

Minor BPS

45.6

-0.2

2.1

68.07

42.7

Associated Gene:

Gene:

PABPC4

Ensembl Gene ID:

ENSAPLG00000009729

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036593

6843555 - 6855304

11750

ENSAPLT00000010160

6843555 - 6855304

11750