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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6848641_6849127_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6848641 - 6849127
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
TTATTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTTTCATTATTT
Flanking Amino Acid:
MNGMLLNDRKVFVGRFKSRK
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
68.7
36.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
86.3
0.82
0.7
81.1
30.8
Minor 5ss
33.8
-1.8
3.4
44.3
43.6
Minor BPS
61.3
0.43
1.9
80.9
41.2

Associated Gene:

Gene:
PABPC4
Ensembl Gene ID:
ENSAPLG00000009729
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036593
6843555 - 6855304
11750
ENSAPLT00000022952
6843555 - 6855304
11750
ENSAPLT00000010160
6843555 - 6855304
11750