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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6905487_6907814_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6905487 - 6907814
Intron Length:
2328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCGC
5'SS Class:
major
3'SS Sequence:
CCTCTTCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
GCCTCTTCCACC
Flanking Amino Acid:
RVIIGDREWAAHTRSKSHLH
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
60.9
40.7
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
73.3
0.53
0.9
66.4
34.4
Minor 5ss
29.7
-2.3
3.5
41.4
45.3
Minor BPS
47
-0.2
2
54.58
43.9

Associated Gene:

Gene:
TRIT1
Ensembl Gene ID:
ENSAPLG00000011421
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011928
6904902 - 6917088
12187