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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6907933_6908257_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6907933 - 6908257
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGGAT
5'SS Class:
major
3'SS Sequence:
ATTTAACCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
CATTATTTAACC
Flanking Amino Acid:
ALEIVESFIQGRQPPAEPVR
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.5
39
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
70.9
0.47
0.9
63.1
37.7
Minor 5ss
29.2
-2.4
3.8
46
49.3
Minor BPS
67.6
0.53
1.5
72.39
38.6

Associated Gene:

Gene:
TRIT1
Ensembl Gene ID:
ENSAPLG00000011421
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011928
6904902 - 6917088
12187