About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6910847_6911126_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6910847 - 6911126
Intron Length:
280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGGTGAG
5'SS Class:
major
3'SS Sequence:
CCTTGCTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAC
U12 Branch Point Sequence:
ACGGCCCTAACC
Flanking Amino Acid:
RYNQQKVAENRQDYQHGIFQ
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
59.7
41.3
Major BPS
59.7
0.24
1.1
61.2
32.6
Major PPT
78.5
0.64
0.8
69.1
37
Minor 5ss
25.7
-2.8
3.2
30.8
43.2
Minor BPS
53.1
0.08
1.8
61.17
44.1

Associated Gene:

Gene:
TRIT1
Ensembl Gene ID:
ENSAPLG00000011421
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011928
6904902 - 6917088
12187