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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6913453_6916707_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6913453 - 6916707
Intron Length:
3255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCACAC
U12 Branch Point Sequence:
AGGTGGGCAATG
Flanking Amino Acid:
GEIVSADSMQVYKGLDIITN
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
52.6
0.07
1.1
60.7
37.6
Major PPT
83.5
0.75
0.7
76.7
32
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
30.8
-1.5
2.6
34.02
40.8

Associated Gene:

Gene:
TRIT1
Ensembl Gene ID:
ENSAPLG00000011421
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011928
6904902 - 6917088
12187