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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6940339_6940445_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6940339 - 6940445

Intron Length:

107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGGCT

5'SS Class:

strong_major

3'SS Sequence:

CGTTCCTCTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCAAC

U12 Branch Point Sequence:

TTGGTGCCAACG

Flanking Amino Acid:

SIPALGWVAMAPKPGPYVKE

Intron Amino Acid Position:

197

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.4

0.76

0.9

72.2

37.2

Major BPS

48.7

-0

1.3

56.4

38.8

Major PPT

76.6

0.6

0.8

73.9

31.2

Minor 5ss

-2.1

3.6

44.7

44.3

Minor BPS

38.3

-1

2.4

47.37

45.9

Associated Gene:

Gene:

CAP1

Ensembl Gene ID:

ENSAPLG00000011906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035977

6937726 - 6944919

7194

ENSAPLT00000012411

6862480 - 6943966

81487