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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6941455_6942121_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6941455 - 6942121

Intron Length:

667

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

ATTTCTTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCTTGAT

U12 Branch Point Sequence:

TCAGGCTTGATT

Flanking Amino Acid:

QINRGEGITAGLRHVSDDMK

Intron Amino Acid Position:

320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

68.4

36.9

Major BPS

66.1

0.4

1.3

59.3

47.1

Major PPT

89.8

0.89

0.7

Minor 5ss

27.7

-2.6

31.6

37.6

Minor BPS

0.08

1.9

66.98

44.5

Associated Gene:

Gene:

CAP1

Ensembl Gene ID:

ENSAPLG00000011906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035977

6937726 - 6944919

7194

ENSAPLT00000012411

6862480 - 6943966

81487