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Intron Name: Anas_platyrhynchos_platyrhynchos_24_6942310_6942514_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6942310 - 6942514

Intron Length:

205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

CTCTCCTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

TCTTCTAAAAAT

Flanking Amino Acid:

LELEGKKWRVENHENATNLV

Intron Amino Acid Position:

383

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.1

32.7

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

86.2

0.81

0.7

83.9

24.1

Minor 5ss

28.6

-2.4

32.8

35.9

Minor BPS

49.5

0.05

73.73

43.2

Associated Gene:

Gene:

CAP1

Ensembl Gene ID:

ENSAPLG00000011906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035977

6937726 - 6944919

7194

ENSAPLT00000012411

6862480 - 6943966

81487