Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6942824_6943373_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6942824 - 6943373

Intron Length:

550

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCATC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTGCCGCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

GCTCCTCTCACT

Flanking Amino Acid:

IINSRDVKVQVMGKVPTISI

Intron Amino Acid Position:

452

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.4

0.88

0.8

81.3

32.8

Major BPS

72.7

0.56

30.1

Major PPT

65.6

0.35

59.2

42.9

Minor 5ss

38.5

-1.3

51.2

45.7

Minor BPS

47.2

-0.1

2.1

66.65

43.9

Associated Gene:

Gene:

CAP1

Ensembl Gene ID:

ENSAPLG00000011906

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035977

6937726 - 6944919

7194

ENSAPLT00000012411

6862480 - 6943966

81487