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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6947432_6947506_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6947432 - 6947506
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAT
U12 Branch Point Sequence:
CTGGCCTGATCT
Flanking Amino Acid:
LGAYTPAVQEHLVQAEYWHD
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1
65.5
40.2
Major BPS
61
0.27
1.3
53.3
44.2
Major PPT
87.4
0.84
0.7
80.6
31.4
Minor 5ss
32.8
-2
2.7
40.5
39
Minor BPS
49.8
0.06
1.9
68.36
48.2

Associated Gene:

Gene:
PPT1
Ensembl Gene ID:
ENSAPLG00000012514
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031115
6945452 - 6950459
5008
ENSAPLT00000013025
6945457 - 6949830
4374
ENSAPLT00000035158
6945452 - 6950892
5441