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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6948444_6949488_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6948444 - 6949488
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
CCTTTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
GCGGCGCTGACT
Flanking Amino Acid:
CPCASAPRSCRRAVAQRCPS
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
81.2
0.7
0.7
76.4
25.6
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
41.5
-0.5
2.3
56.11
46.4

Associated Gene:

Gene:
PPT1
Ensembl Gene ID:
ENSAPLG00000012514
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035158
6945452 - 6950892
5441