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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6948843_6948949_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6948843 - 6948949
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAGGGC
5'SS Class:
major
3'SS Sequence:
ATCTGGCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
GCTTCCTCATCT
Flanking Amino Acid:
PEFPFHHLVKDVENSFFMNA
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
60.7
38.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
62.9
0.29
1.1
54.3
45.3
Minor 5ss
23.5
-3.1
3.4
32
42.8
Minor BPS
60
0.39
1.9
77.14
45

Associated Gene:

Gene:
PPT1
Ensembl Gene ID:
ENSAPLG00000012514
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013025
6945457 - 6949830
4374