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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_6949058_6949488_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6949058 - 6949488
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TGAAATTGGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
AGGAACTGAAAT
Flanking Amino Acid:
SLRIGASVLQKSGEVPLLWR
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
47.4
-0.1
1.3
45
45.4
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
46.3
-0.2
1.7
59.99
42.2

Associated Gene:

Gene:
PPT1
Ensembl Gene ID:
ENSAPLG00000012514
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013025
6945457 - 6949830
4374