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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7004007_7004177_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7004007 - 7004177
Intron Length:
171

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTACATTCAAAT
Flanking Amino Acid:
RRSRSHSDNDRFKHRNRSFS
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
76.3
28.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.8
0.58
1
73.3
37.2
Minor 5ss
36.6
-1.5
3.1
46.9
48.4
Minor BPS
48.6
-0
1.8
69.48
40.6

Associated Gene:

Gene:
SRSF10
Ensembl Gene ID:
ENSAPLG00000005446
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005621
7003709 - 7008394
4686