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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7004232_7004539_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7004232 - 7004539
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TATACCTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTTCTGATAT
Flanking Amino Acid:
YSYRRSYSPRNSRPTGRPRR
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.9
30
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
75.2
0.57
0.9
66.5
40.1
Minor 5ss
34.7
-1.7
3.2
41.8
38.8
Minor BPS
58.6
0.35
1.8
81.96
39.1

Associated Gene:

Gene:
SRSF10
Ensembl Gene ID:
ENSAPLG00000005446
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005621
7003709 - 7008394
4686