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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7019944_7020033_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7019944 - 7020033
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGCTTATTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
ATTTGCTTATTC
Flanking Amino Acid:
RLKEAAVAEKCRARVVQGLP
Intron Amino Acid Position:
1313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
76.2
34.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
77.4
0.62
0.9
69.3
40.8
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
58.1
0.23
2
72.44
39.2

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626