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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7020057_7020181_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7020057 - 7020181
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTCTCTTCATT
Flanking Amino Acid:
EDALAEHRRLKEAAVAEKCR
Intron Amino Acid Position:
1305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
85.1
25.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.3
0.84
0.7
85
28.5
Minor 5ss
46.5
-0.4
2.7
61.9
36.7
Minor BPS
59.5
0.38
1.7
76.4
40.9

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626