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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7022782_7023414_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7022782 - 7023414
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAC
5'SS Class:
major
3'SS Sequence:
ACGTATTTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATCT
Flanking Amino Acid:
TGIGTLCVKKITKADEGQYK
Intron Amino Acid Position:
1161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
73.6
30.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
66
0.36
1.1
60.9
43.9
Minor 5ss
27.7
-2.6
2.9
33.7
41.9
Minor BPS
60.7
0.41
1.9
81.81
39.4

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626