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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7023882_7024566_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7023882 - 7024566
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTTTCTTTTATA
Flanking Amino Acid:
AKRREWKKKQGPYFIENLRW
Intron Amino Acid Position:
1101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
71.3
0.53
1
61.3
37
Major PPT
91.5
0.93
0.6
88
22
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
72.9
0.71
1.5
82.82
31.5

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626