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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7024627_7025843_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7024627 - 7025843
Intron Length:
1217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
ACTGTTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTGACTTTGACA
Flanking Amino Acid:
NQFTLVLLDERFAKVAEEAD
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.4
39.5
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
79.8
0.67
0.9
72.7
37
Minor 5ss
33.4
-1.9
3.2
39.3
39.8
Minor BPS
69.7
0.61
1.3
74.84
36.8

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626