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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7025989_7027623_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7025989 - 7027623
Intron Length:
1635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
TTGTTTTACACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGCTATTTAATT
Flanking Amino Acid:
FNEKELKSTPTHKINFVKGK
Intron Amino Acid Position:
1033

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.1
64
43
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
80.2
0.68
0.9
76.6
36.7
Minor 5ss
44.9
-0.5
3
63.1
42.5
Minor BPS
61.5
0.44
1.5
71.82
39.5

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626