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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7029050_7029266_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7029050 - 7029266
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAAAC
5'SS Class:
major
3'SS Sequence:
TTTTGTCATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTGTCATAC
Flanking Amino Acid:
SDPVVAKTKPGTNEIELGVD
Intron Amino Acid Position:
883

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
69.5
34.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.6
0.73
0.9
77.3
36.1
Minor 5ss
40
-1.1
2.8
48.8
41.7
Minor BPS
43.6
-0.5
2.4
63.32
42.2

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626