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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7029637_7030134_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7029637 - 7030134
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTCTC
5'SS Class:
major
3'SS Sequence:
CTTCTCCGGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TATTGCTTGACA
Flanking Amino Acid:
KCEEWTMPEPGPPYDVKFTE
Intron Amino Acid Position:
785

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
67.3
44.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.2
0.41
1
64.6
36.6
Minor 5ss
43.3
-0.7
3.1
62
42.6
Minor BPS
69.8
0.62
1.8
79.46
36.6

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626