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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7030625_7031298_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7030625 - 7031298
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTGTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TCCTCCTTCCCT
Flanking Amino Acid:
TDPIVVRPAIARPSAPRGFV
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
76.9
38.1
Major BPS
62
0.3
1
53
34.1
Major PPT
78
0.63
0.9
72.8
37.5
Minor 5ss
36.9
-1.5
2.9
48.3
42.5
Minor BPS
44.5
-0.3
3.6
75.03
47.8

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626