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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7031421_7032059_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7031421 - 7032059
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AACACAGTAATT
Flanking Amino Acid:
TVNNKPVTCNEFTVPGLQPG
Intron Amino Acid Position:
639

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.4
34.1
Major BPS
69.8
0.49
1
61
37.5
Major PPT
83.7
0.76
0.7
77.7
31.1
Minor 5ss
36.3
-1.6
2.8
38.1
40.6
Minor BPS
44.9
-0.3
2.2
61.5
42.3

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626