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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7038100_7038523_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7038100 - 7038523
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAT
5'SS Class:
strong_major
3'SS Sequence:
AATATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
GAAACCTTAAAT
Flanking Amino Acid:
KFGMLTLQISRCSMEDSAEY
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
74.9
34.9
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
81.1
0.7
0.9
77.8
40.5
Minor 5ss
31
-2.2
3.6
46.5
48.8
Minor BPS
65.1
0.55
1.5
73.9
41.6

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626