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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7039578_7039818_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7039578 - 7039818
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAAAA
5'SS Class:
major
3'SS Sequence:
ATCTTTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGCCTTTATTT
Flanking Amino Acid:
RADRKALRKKAVEKAQMEKD
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.2
76.9
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.4
0.62
0.9
71.9
37.5
Minor 5ss
28.2
-2.5
2.7
31.6
42.2
Minor BPS
61.9
0.45
1.6
76.92
40.3

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626