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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7040792_7040952_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7040792 - 7040952
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCTGGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTGTCTGGATT
Flanking Amino Acid:
STTRKKRFKTSEEEETFSLS
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
57.5
0.17
1.1
59.7
35.8
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
59.3
0.37
1.6
78.87
37.8

Associated Gene:

Gene:
MYOM3
Ensembl Gene ID:
ENSAPLG00000003784
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003974
7017561 - 7043186
25626