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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_24_7062560_7062812_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7062560 - 7062812
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAT
U12 Branch Point Sequence:
GCATGCTTAATA
Flanking Amino Acid:
PDVAYTVRYESQERMDKWIK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
89.6
0.89
0.6
89.2
19.8
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
59.5
0.3
1.8
64.69
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003557
Chromosome:
24

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003629
7058108 - 7063663
5556